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ToxSci Advance Access published online on May 17, 2006

Toxicological Sciences, doi:10.1093/toxsci/kfl019
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© The Author 2006. Published by Oxford University Press on behalf of the Society of Toxicology. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org
Received January 30, 2006
Accepted April 11, 2006

Systems Toxicology

Agonists of the Peroxisome Proliferator Activated Receptor Alpha (PPAR{alpha}) Induce a Fiber-Type Selective Transcriptional Response in Rat Skeletal Muscle

Angus T. De Souza 1 *, Paul D. Cornwell 1, Xudong Dai 1, Michelle J. Caguyong 1, and Roger G. Ulrich 1

1 Rosetta Inpharmatics LLC, a wholly owned subsidiary of Merck & Co., Inc., 401 Terry Ave N, Seattle, WA 98109, USA

* To whom correspondence should be addressed.
Angus T. De Souza, E-mail: angus_desouza{at}w-link.net


   Abstract

In rodents, treatment with peroxisome proliferator-activated receptor alpha (PPAR{alpha}) agonists results in peroxisome proliferation, hepatocellular hypertrophy and hepatomegaly. Drugs in the fibrate class of PPAR{alpha} agonists have also been reported to produce rare skeletal muscle toxicity. Although target-driven hepatic effects of PPAR{alpha} treatment have been extensively studied, a characterization of the transcriptional effects of this nuclear receptor/transcription factor on skeletal muscle responses has not been reported. In this study we investigated the effects of PPAR{alpha} agonists on skeletal muscle gene transcription in rats. Further, since statins have been reported to preferentially effect type II muscle fibers we compared PPAR{alpha} signaling effects between type I and type II muscles. By comparing the transcriptional responses of agonists that signal through different nuclear receptors and, using a selection/deselection analytical strategy based on ANOVA, we identified a PPAR{alpha} activation signature that is evident in type-I (soleus) but not type II (quadriceps femoris) skeletal muscle fibers. The fiber-type selective nature of this response is consistent with increased fatty acid uptake and {beta}-oxidation, which represent the major clinical benefits of the hypolipidemic compounds used in this study, but does not reveal any obvious off-target pathways that may drive adverse effects.

Keywords: Peroxisome proliferator-activated receptor alpha (PPAR{alpha}); microarray; fenofibrate; Wy-14,643; liver.
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